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Contents
Publications
Peer-reviewed articles, preprints, and other scholarly works from the community.
173Publications126Distinct journalsList Months-long stability of the head-direction system Journal ArticleS. Skromne Carrasco,G. Viejo,A. PeyracheNature 652(8108):167–173 (2026).
Dissociable roles of prefrontal plasticity in decision making strategy and execution of habitual behavior Journal ArticleN. Asaoka,D. Pagano,Y. Hayashi
MiniXL: An open-source, large field-of-view epifluorescence miniscope enabling single-cell resolution and multi-region imaging in mice Journal ArticleP. Zhao,C. Guo,M. Xie,L. Chen,P. Golshani,D. AharoniScience Advances 11(24):eads4995 (2025).DOI: 10.1126/sciadv.ads4995Tool Paper
N. J. Beacher,M. W. Wang,M. C. Broomer,J. Y. Kuo,K. A. Washington,M. Targum,Y. Zhang,G. Barbera,D. LinCurrent Protocols 5(1) (2025).DOI: 10.1002/cpz1.70090Protocol
Open-source, high performance miniature 2-photon microscopy systems for freely behaving animals Journal ArticleB. A. Madruga,C. C. Dorian,L. Yang,M. Sehgal,A. J. Silva,M. Shtrahman,D. Aharoni,P. GolshaniNature Communications 16(1) (2025).DOI: 10.1038/s41467-025-62534-yTool Paper
Simultaneous two-color imaging with a dual-channel miniscope in freely behaving mice Journal ArticleZ. Dong,Y. Feng,K. Diego,A. M. Baggetta,B. M. Sweis,Z. T. Pennington,S. I. Lamsifer,Y. Zaki,F. Sangiuliano,P. A. Philipsberg,D. Morales-Rodriguez,D. Kircher,P. Slesinger,T. Shuman,D. Aharoni,D. J. CaiScience Advances 11(27) (2025).DOI: 10.1126/sciadv.adr6470Tool Paper
Syntalos: a software for precise synchronization of simultaneous multi-modal data acquisition and closed-loop interventions Journal ArticleM. Klumpp,L. Embray,F. Heimburg,A. L. Alves Dias,J. Simon,A. Groh,A. Draguhn,M. BothNature Communications 16(1) (2025).DOI: 10.1038/s41467-025-56081-9Software
A dual-mode, image-enhanced, miniaturized microscopy system for incubator-compatible monitoring of live cells Journal ArticleY. Liao,C. Qin,X. Zhang,J. Ye,Z. Xu,H. Zong,N. Hu,D. ZhangTalanta 278:126537 (2024).
N. J. Beacher,J. Y. Kuo,M. Targum,M. Wang,K. A. Washington,G. Barbera,D. LinMethodsX 12:102721 (2024).
N. Aseyev,A. Borodinova,S. Pavlova,M. Roshchina,M. Roshchin,E. Nikitin,P. BalabanNeuroinformatics 22(3):379–387 (2024).DOI: 10.1007/s12021-024-09677-3Analysis Pipeline
Cholecystokinin facilitates motor skill learning by modulating neuroplasticity in the motor cortex Journal ArticleH. Li,J. Feng,M. Chen,M. Xin,X. Chen,W. Liu,L. Wang,K. H. Wang,J. HeeLife 13 (2024).DOI: 10.7554/elife.83897Science
Constraints on the subsecond modulation of striatal dynamics by physiological dopamine signaling Journal ArticleC. Long,K. Lee,L. Yang,T. Dafalias,A. K. Wu,S. C. MasmanidisNature Neuroscience 27(10):1977–1986 (2024).
Correlated signatures of social behavior in cerebellum and anterior cingulate cortex Journal ArticleS. W. Hur,K. Safaryan,L. Yang,H. T. Blair,S. C. Masmanidis,P. J. Mathews,D. Aharoni,P. GolshanieLife 12 (2024).DOI: 10.7554/elife.88439Science
Cortical regulation of helping behaviour towards others in pain Journal ArticleM. Zhang,Y. E. Wu,M. Jiang,W. HongNature 626(7997):136–144 (2024).
Decoding Secondary Motor Cortex Neuronal Activity during Cocaine Self-Administration: Insights from Longitudinal
in vivo
Calcium Imaging Journal ArticleY. Chen,H. Fu,A. Korada,M. A. Lange,C. Rayanki,T. Lu,D. Lai,S. Fang,C. Guo,Y. Ma
Distinct changes to hippocampal and medial entorhinal circuits emerge across the progression of cognitive deficits in epilepsy Journal ArticleY. Feng,K. S. Diego,Z. Dong,Z. C. Wick,L. Page-Harley,V. Page-Harley,J. Schnipper,S. I. Lamsifer,Z. T. Pennington,L. M. Vetere,P. A. Philipsberg,I. Soler,A. Jurkowski,C. J. Rosado,N. N. Khan,D. J. Cai,T. Shuman
Distinct functional classes of CA1 hippocampal interneurons are modulated by cerebellar stimulation in a coordinated manner Journal ArticleJ. M. Froula,J. J. Rose,C. Krook-Magnuson,E. Krook-Magnuson
Distinct neural mechanisms for heading retrieval and context recognition in the hippocampus during spatial reorientation Journal ArticleC. M. Gagliardi,M. E. Normandin,A. T. Keinath,J. B. Julian,M. R. Lopez,M. Ramos-Alvarez,R. A. Epstein,I. A. MuzzioNature Communications 15(1) (2024).
Excitatory neurons of the anterior cingulate cortex encode chosen actions and their outcomes rather than cognitive state Journal ArticleM. M. Jendryka,U. Lewin,S. K. Kapanaiah,H. Dermutz,B. Liss,A. Pekcec,T. Akam,B. F. Grewe,D. Kätzel
Hidden state inference requires abstract contextual representations in ventral hippocampus Journal ArticleK. Mishchanchuk,G. Gregoriou,A. Qü,A. Kastler,Q. Huys,L. Wilbrecht,A. F. MacAskill
Hippocampal and orbitofrontal neurons contribute to complementary aspects of associative structure Journal ArticleH. Lin,J. ZhouNature Communications 15(1) (2024).
Hippocampal cognitive and relational map paradigms explored by multisensory encoding recording with wide-field calcium imaging Journal ArticleD. Sun,N. E. Shaik,R. R. Unnithan,C. FrenchiScience 27(1):108603 (2024).
A. I. Erofeev,E. K. Vinokurov,I. E. Antifeev,O. L. Vlasova,I. B. BezprozvannyJournal of Evolutionary Biochemistry and Physiology 60(4):1586–1606 (2024).
P. Zhao,C. Guo,M. Xie,L. Chen,P. Golshani,D. Aharoni
F. M. Simoes de Souza,R. Williamson,C. McCullough,A. Teel,G. Futia,M. Ma,A. True,J. P. Crimaldi,E. Gibson,D. Restrepo
Months-long stability of the head-direction system Journal ArticleS. S. Carrasco,G. Viejo,A. Peyrache
Neural coding in gustatory cortex reflects consumption decisions: Evidence from conditioned taste aversion Journal ArticleM. A. Raymond,I. F. Chapman,S. M. Staszko,M. L. Fletcher,J. D. Boughter
On Optimizing Miniscope Data Analysis with Simulated Data: A Study of Parameter Optimization in the Minian Analysis Pipeline Journal ArticleA. I. Erofeev,M. V. Petrushan,L. V. Lysenko,E. K. Vinokurov,O. L. Vlasova,I. B. BezprozvannyNeuroscience and Behavioral Physiology 54(2):251–262 (2024).
Prefrontal multistimulus integration within a dedicated disambiguation circuit guides interleaving contingency judgment learning Journal ArticleE. Korzus,J. Pastore,J. Mayer,T. Bailey,J. S. III,J. Steinhauser,K. Shuler,E. Papalexakis
Protocol for calcium imaging and analysis of hippocampal CA1 activity evoked by non-spatial stimuli Journal ArticleD. Sun,M. Amiri,R. R. Unnithan,C. FrenchSTAR Protocols 5(2):103110 (2024).DOI: 10.1016/j.xpro.2024.103110Protocol
Social valence dictates sex differences in identity recognition Journal ArticleA. Larosa,Q. W. Xu,A. S. Wong,J. Q. Lee,M. P. Brandon,T. P. Wong
Stable sequential dynamics in prefrontal cortex represents subjective estimation of time Journal ArticleY. Li,W. Yin,X. Wang,J. Li,S. Zhou,C. Ma,P. Yuan,B. Li
Subicular neurons encode concave and convex geometries Journal ArticleY. Sun,D. A. Nitz,X. Xu,L. M. GiocomoNature 627(8005):821–829 (2024).
T-scope V4: miniaturized microscope for optogenetic tagging in freely behaving animals Journal ArticleY. Wang,P. Vergara,S. Hasegawa,N. Tomita,Y. Cherasse,T. Naoi,T. Sakurai,Y. Sugaya,M. Kano,M. Sakaguchi
Targeted micro-fiber arrays for measuring and manipulating localized multi-scale neural dynamics over large, deep brain volumes during behavior Journal ArticleM. T. Vu,E. H. Brown,M. J. Wen,C. A. Noggle,Z. Zhang,K. J. Monk,S. Bouabid,L. Mroz,B. M. Graham,Y. Zhuo,Y. Li,T. M. Otchy,L. Tian,I. G. Davison,D. A. Boas,M. W. HoweNeuron 112(6):909–923.e9 (2024).
T. A. Schall,K. Li,X. Qi,B. T. Lee,W. J. Wright,E. E. Alpaugh,R. J. Zhao,J. Liu,Q. Li,B. Zeng,L. Wang,Y. H. Huang,O. M. Schlüter,E. J. Nestler,E. H. Nieh,Y. Dong
C. D. Borkar,C. E. Stelly,X. Fu,M. Dorofeikova,Q. E. Le,R. Vutukuri,C. Vo,A. B. Walker,S. Basavanhalli,A. Duong,E. Bean,A. Resendez,J. G. Parker,J. G. Tasker,J. P. FadokNature 625(7996):743–749 (2024).
Toward a brighter constellation: multiorgan neuroimaging of neural and vascular dynamics in the spinal cord and brain Journal ArticleD. Celinskis,C. J. Black,J. Murphy,A. Barrios-Anderson,N. G. Friedman,N. C. Shaner,C. Y. Saab,M. Gomez-Ramirez,D. A. Borton,C. I. MooreNeurophotonics 11(02) (2024).
<scp>MiniMounter</scp>: A low‐cost miniaturized microscopy development toolkit for image quality control and enhancement Journal ArticleX. Zhu,L. Gu,R. Li,L. Chen,J. Chen,N. Zhou,W. RenJournal of Biophotonics 17(2) (2023).
J. Zhang,X. XinIEEE Photonics Journal 15(5):1–6 (2023).
Z. Chen,G. J. Blair,C. Guo,J. Zhou,J. Romero-Sosa,A. Izquierdo,P. Golshani,J. Cong,D. Aharoni,H. T. BlaireLife 12 (2023).
A manifold neural population code for space in hippocampal coactivity dynamics independent of place fields Journal ArticleE. R. Levy,S. Carrillo-Segura,E. H. Park,W. T. Redman,J. R. Hurtado,S. Chung,A. A. FentonCell Reports 42(10):113142 (2023).
G. Etter,S. van der Veldt,C. Mosser,M. E. Hasselmo,S. Williams
A unified open-source platform for multimodal neural recording and perturbation during naturalistic behavior Journal ArticleJ. P. Newman,J. Zhang,A. Cuevas-López,N. J. Miller,T. Honda,M. H. van der Goes,A. H. Leighton,F. Carvalho,G. Lopes,A. Lakunina,J. H. Siegle,M. T. Harnett,M. A. Wilson,J. Voigts
Accelerated social representational drift in the nucleus accumbens in a model of autism Journal ArticleP. Zhao,X. Chen,A. Bellafard,A. Murugesan,J. Quan,D. Aharoni,P. Golshani
S. J. Kim,R. O. Affan,H. Frostig,B. B. Scott,A. S. AlexanderNeurophotonics 10(04) (2023).
An optical design enabling lightweight and large field-of-view head-mounted microscopes Journal ArticleJ. R. Scherrer,G. F. Lynch,J. J. Zhang,M. S. FeeNature Methods 20(4):546–549 (2023).
Aversive experience drives offline ensemble reactivation to link memories across days Journal ArticleY. Zaki,Z. T. Pennington,D. Morales-Rodriguez,T. R. Francisco,A. R. LaBanca,Z. Dong,S. Lamsifer,S. C. Segura,H. Chen,Z. Christenson Wick,A. J. Silva,M. van der Meer,T. Shuman,A. Fenton,K. Rajan,D. J. Cai
Calcium imaging and analysis of the jugular-nodose ganglia enables identification of distinct vagal sensory neuron subsets Journal ArticleT. S. Huerta,B. Haider,R. Adamovich-Zeitlin,A. C. Chen,S. Chaudhry,T. P. Zanos,S. S. Chavan,K. J. Tracey,E. H. ChangJournal of Neural Engineering 20(2):026014 (2023).
CaliAli, a tool for long-term tracking of neuronal population dynamics in calcium imaging Journal ArticleP. Vergara,Y. Wang,S. Srinivasan,Y. Cherasse,T. Naoi,Y. Sugaya,T. Sakurai,M. Kano,M. Sakaguchi
Characterization of ventromedial hypothalamus activity during exposure to innate and conditioned threats Journal ArticleB. C. Tobias,P. J. Schuette,S. Maesta‐Pereira,A. Torossian,W. Wang,E. Sethi,A. AdhikariEuropean Journal of Neuroscience 57(7):1053–1067 (2023).DOI: 10.1111/ejn.15937Science
Conjunctive vector coding and place coding in hippocampus share a common directional signal Journal ArticleY. Zhou,V. Puliyadi,X. Chen,J. L. Lee,L. Zhang,J. J. Knierim
B. Kaang,H. Ko,D. I. Choi,C. Lee,J. E. Choi,J. Oh,S. Han,S. Ye,J. Lee,H. Jung,J. Lee,K. Lee,J. Lee,M. Zhuo
Current Status and Future Strategies for Advancing Functional Circuit MappingIn Vivo Journal ArticleA. Berndt,D. Cai,A. Cohen,B. Juarez,J. T. Iglesias,H. Xiong,Z. Qin,L. Tian,P. A. SlesingerThe Journal of Neuroscience 43(45):7587–7598 (2023).
G. Chen,S. Lai,G. Bao,J. Ke,X. Meng,S. Lu,X. Wu,H. Xu,F. Wu,Y. Xu,F. Xu,G. Bi,G. Peng,K. Zhou,Y. ZhuCell Reports 42(2):112069 (2023).
Distributed processing for value-based choice by prelimbic circuits targeting anterior-posterior dorsal striatal subregions in male mice Journal ArticleK. Choi,E. Piasini,E. Díaz-Hernández,L. V. Cifuentes,N. T. Henderson,E. N. Holly,M. Subramaniyan,C. R. Gerfen,M. V. FuccilloNature Communications 14(1) (2023).
Elucidating a locus coeruleus-dentate gyrus dopamine pathway for operant reinforcement Journal ArticleE. A. Petter,I. P. Fallon,R. N. Hughes,G. D. Watson,W. H. Meck,F. P. Ulloa Severino,H. H. YineLife 12 (2023).DOI: 10.7554/elife.83600Science
L. Chen,T. R. Francisco,A. M. Baggetta,Y. Zaki,S. Ramirez,R. L. Clem,T. Shuman,D. J. CaiNeurobiology of Aging 123:92–97 (2023).
G. J. Blair,C. Guo,S. Wang,M. S. Fanselow,P. Golshani,D. Aharoni,H. T. BlaireLife 12 (2023).DOI: 10.7554/elife.80661Science
Identifying representational structure in CA1 to benchmark theoretical models of cognitive mapping Journal ArticleJ. Q. Lee,A. T. Keinath,E. Cianfarano,M. P. Brandon
Imaging neuro-urodynamics of mouse major pelvic ganglion with a micro-endoscopic approach Journal ArticleB. R. Berigan,J. Wang,D. J. Schulz,I. OzdenJournal of Neurophysiology 129(2):479–493 (2023).DOI: 10.1152/jn.00450.2022Science
Implementation of miniaturized modular-array fluorescence microscopy for long-term live-cell imaging Journal ArticleQ. Chen,J. Son,S. JiaApplied Optics 62(10):2456 (2023).
Learning-prolonged maintenance of stimulus information in CA1 and subiculum during trace fear conditioning Journal ArticleT. Bai,L. Zhan,N. Zhang,F. Lin,D. Saur,C. XuCell Reports 42(8):112853 (2023).
Mechanism of kisspeptin neuron synchronization for pulsatile hormone secretion in male mice Journal ArticleS. Y. Han,P. G. Morris,J. Kim,S. Guru,M. Pardo-Navarro,S. Yeo,H. J. McQuillan,A. E. HerbisonCell Reports 42(1):111914 (2023).
C. Guo,G. J. Blair,M. Sehgal,F. N. Jimka,A. Bellafard,A. J. Silva,P. Golshani,M. A. Basso,H. T. Blair,D. AharoniScience Advances 9(16):eadg3918 (2023).DOI: 10.1126/sciadv.adg3918Tool Paper
X. Zhu,L. Gu,R. Li,L. Chen,J. Chen,N. Zhou,W. RenSecond Conference on Biomedical Photonics and Cross-Fusion (BPC 2023):24 (2023).
F. Habibollahi,D. Sun,A. N. Burkitt,C. French
Open-MAC: A low-cost open-source motorized commutator for electro- and opto-physiological recordings in freely moving rodents Journal ArticleS. K. Kapanaiah,D. KätzelHardwareX 14:e00429 (2023).DOI: 10.1016/j.ohx.2023.e00429Tool Paper
Optogenetic frequency scrambling of hippocampal theta oscillations dissociates working memory retrieval from hippocampal spatiotemporal codes Journal ArticleG. Etter,S. van der Veldt,J. Choi,S. WilliamsNature Communications 14(1) (2023).
Z. Ajabi,A. T. Keinath,X. Wei,M. P. BrandonNature 615(7954):892–899 (2023).
Representational similarity supports rapid context retrieval during fear discrimination in ventral hippocampus Journal ArticleR. R. Rozeske,L. Runtz,A. T. Keinath,A. Sossin,M. P. Brandon
Somatic Calcium Signals from Layer II/III Motor Cortex for Continuous Neural Decoding Journal ArticleR. Wang,J. Han,X. Hu,H. You,S. Zhang
The subiculum encodes environmental geometry Journal ArticleY. Sun,D. A. Nitz,X. Xu,L. M. Giocomo
Y. Hayashi,K. Kobayakawa,R. KobayakawaProceedings of the National Academy of Sciences 120(17) (2023).DOI: 10.1073/pnas.2221141120Science
Unraveling the mechanisms of deep-brain stimulation of the internal capsule in a mouse model Journal ArticleB. J. van den Boom,A. Elhazaz-Fernandez,P. A. Rasmussen,E. H. van Beest,A. Parthasarathy,D. Denys,I. WilluhnNature Communications 14(1) (2023).
K. G. Jameson,S. A. Kazmi,C. Son,D. Mazdeyasnan,E. Leshan,H. E. Vuong,J. Paramo,A. Lopez-Romero,L. Yang,F. E. Schweizer,E. Y. Hsiao
A circuit from lateral septum neurotensin neurons to tuberal nucleus controls hedonic feeding Journal ArticleZ. Chen,G. Chen,J. Zhong,S. Jiang,S. Lai,H. Xu,X. Deng,F. Li,S. Lu,K. Zhou,C. Li,Z. Liu,X. Zhang,Y. ZhuMolecular Psychiatry 27(12):4843–4860 (2022).
A. Chowdhury,A. Luchetti,G. Fernandes,D. A. Filho,G. Kastellakis,A. Tzilivaki,E. M. Ramirez,M. Y. Tran,P. Poirazi,A. J. SilvaNeuron 110(20):3374-3388.e8 (2022).
A longitudinal CA2/3 to CA1 circuit for initiating context-dependent associative learning Journal ArticleH. Chen,S. Qiu,G. Wang,R. Yang,N. Zhang,J. Wu,Q. Yang,C. Xu
A one-photon endoscope for simultaneous patterned optogenetic stimulation and calcium imaging in freely behaving mice Journal ArticleJ. Zhang,R. N. Hughes,N. Kim,I. P. Fallon,K. Bakhurin,J. Kim,F. P. Severino,H. H. YinNature Biomedical Engineering 7(4):499–510 (2022).
Advances of optical miniscopes for in vivo imaging of neural activity in freely moving animals Journal ArticleK. Chen,Z. Tian,L. KongFrontiers in Neuroscience 16 (2022).
Amygdalostriatal transition zone neurons encode sustained valence to direct conditioned behaviors Journal ArticleF. Mills,C. R. Lee,J. R. Howe,H. Li,S. Shao,M. N. Keisler,M. E. Lemieux,F. H. Taschbach,L. R. Keyes,M. Borio,H. S. Chen,R. R. Patel,A. L. Gross,J. Delahanty,C. Cazares,L. Maree,R. Wichmann,T. D. Pereira,M. K. Benna,C. M. Root,K. M. Tye
An Open-Source Real-Time Motion Correction Plug-In for Single-Photon Calcium Imaging of Head-Mounted Microscopy Journal ArticleM. Li,C. Liu,X. Cui,H. Jung,H. You,L. Feng,S. ZhangFrontiers in Neural Circuits 16 (2022).
BehaviorDEPOT is a simple, flexible tool for automated behavioral detection based on markerless pose tracking Journal ArticleC. J. Gabriel,Z. Zeidler,B. Jin,C. Guo,C. M. Goodpaster,A. Q. Kashay,A. Wu,M. Delaney,J. Cheung,L. E. DiFazio,M. J. Sharpe,D. Aharoni,S. A. Wilke,L. A. DeNardoeLife 11 (2022).
Cable-free brain imaging with miniature wireless microscopes Journal ArticleY. Wang,Z. Ma,W. Li,F. Su,C. Wang,W. Xiong,C. Li,C. Zhang
Calcium activity is a degraded estimate of spikes Journal ArticleE. E. Hart,M. P. Gardner,M. C. Panayi,T. Kahnt,G. SchoenbaumCurrent Biology 32(24):5364-5373.e4 (2022).
Custom-Built Operant Conditioning Setup for Calcium Imaging and Cognitive Testing in Freely Moving Mice Journal ArticleP. Vassilev,E. Fonseca,G. Hernandez,A. H. Pantoja-Urban,M. Giroux,D. Nouel,E. Van Leer,C. Floreseneuro 9(1):ENEURO.0430-21.2022 (2022).
Dissociable effects of oxycodone on behavior, calcium transient activity, and excitability of dorsolateral striatal neurons Journal ArticleJ. Barry,K. D. Oikonomou,A. Peng,D. Yu,C. Yang,P. Golshani,C. J. Evans,M. S. Levine,C. CepedaFrontiers in Neural Circuits 16 (2022).
Ensemble remodeling supports memory-updating Journal ArticleW. Mau,A. M. Baggetta,Z. Dong,B. M. Sweis,D. Morales-Rodriguez,Z. T. Pennington,T. Francisco,D. J. Freedman,M. G. Baxter,T. Shuman,D. J. Cai
F. A. Manno,Z. An,R. Kumar,J. Su,J. Liu,E. X. Wu,J. He,Y. Feng,C. LauNeuroImage 252:119016 (2022).
GABAergic CA1 neurons are more stable following context changes than glutamatergic cells Journal ArticleP. J. Schuette,J. M. Ikebara,S. Maesta-Pereira,A. Torossian,E. Sethi,A. H. Kihara,J. C. Kao,F. M. Reis,A. AdhikariScientific Reports 12(1) (2022).
Highly unstable heterogeneous representations in VIP interneurons of the anterior cingulate cortex Journal ArticleC. Johnson,L. N. Kretsge,W. W. Yen,B. Sriram,A. O’Connor,R. S. Liu,J. C. Jimenez,R. A. Phadke,K. K. Wingfield,C. Yeung,T. J. Jinadasa,T. P. Nguyen,E. S. Cho,E. Fuchs,E. D. Spevack,B. E. Velasco,F. S. Hausmann,L. A. Fournier,A. Brack,S. Melzer,A. Cruz-MartínMolecular Psychiatry 27(5):2602–2618 (2022).
H. S. Wirtshafter,J. F. DisterhoftThe Journal of Neuroscience 42(22):4538–4554 (2022).
X. Lin,L. Chen,A. Jullienne,H. Zhang,A. Salehi,M. Hamer,T. C. Holmes,A. Obenaus,X. XuActa Neuropathologica Communications 10(1) (2022).
Minian, an open-source miniscope analysis pipeline Journal ArticleZ. Dong,W. Mau,Y. Feng,Z. T. Pennington,L. Chen,Y. Zaki,K. Rajan,T. Shuman,D. Aharoni,D. J. CaieLife 11 (2022).DOI: 10.7554/elife.70661Analysis Pipeline
N. Ohkawa,K. GhandourBehavioral Neurogenetics:157–174 (2022).
Neural circuit dynamics of drug-context associative learning in the mouse hippocampus Journal ArticleY. Sun,L. M. GiocomoNature Communications 13(1) (2022).
Neuronal activity under transcranial radio-frequency stimulation in metal-free rodent brains in-vivo Journal ArticleO. Yaghmazadeh,M. Vöröslakos,L. Alon,G. Carluccio,C. Collins,D. K. Sodickson,G. BuzsákiCommunications Engineering 1(1) (2022).
A. Abdelfattah,S. R. Allu,R. E. Campbell,X. Cheng,T. Cižmár,I. Costantini,V. Emiliani,N. Fomin-Thunemann,A. Gilad,T. Fernández Alfonso,C. G. Ferri,A. Harris,E. M. Hillman,M. G. Holt,K. Kiliç,E. W. Miller,R. C. Mesquita,K. N. Nadella,U. V. Nägerl,C. Perez Campos,F. Puppo,S. Shoham,R. A. Silver,V. J. Srinivasan,M. Thunemann,L. Tian,S. A. Vinogradov,F. Vitale,H. Uhlirova,C. Xu,M. Yang,Y. Zhao,S. Ahuja,T. Akkin,J. Brake,D. A. Boas,E. M. Buckley,A. I. Chen,M. De Vittorio,A. Devor,P. Doran,M. El Khatib,Y. Fainman,X. Han,U. Hochgeschwender,N. Ji,E. Lake,L. Li,T. Li,P. Machler,Y. Nasu,A. Nimmerjahn,P. Ondrácková,F. S. Pavone,D. Peterka,F. Pisano,F. Pisanello,B. L. Sabatini,S. Sadegh,S. Sakadžic,S. N. Shroff,R. R. Sims,S. L. Smith,L. Tian,T. Troxler,A. Valera,A. Vaziri,L. V. Wang,C. Yang,G. Yellen,O. YizharNeurophotonics 9(S1) (2022).
C. Guo,A. Wang,H. Cheng,L. ChenJournal of Neurochemistry 164(3):270–283 (2022).DOI: 10.1111/jnc.15711Review
Place cells are nonrandomly clustered by field location in <scp>CA1</scp> hippocampus Journal ArticleH. S. Wirtshafter,J. F. DisterhoftHippocampus 33(2):65–84 (2022).DOI: 10.1002/hipo.23489Science
P. Vogel,J. Hahn,S. Duvarci,T. SigurdssonCell Reports 39(2):110659 (2022).
Y. Zhang,G. Zhang,X. Han,J. Wu,Z. Li,X. Li,G. Xiao,H. Xie,L. Fang,Q. Dai
Simultaneous Cellular Imaging, Electrical Recording and Stimulation of Hippocampal Activity in Freely Behaving Mice Journal ArticleC. Y. Kim,S. J. Kim,F. KloostermanExperimental Neurobiology 31(3):208–220 (2022).DOI: 10.5607/en22011Science
Spatial coding defects of hippocampal neural ensemble calcium activities in the triple-transgenic Alzheimer’s disease mouse model Journal ArticleX. Lin,L. Chen,D. Baglietto-Vargas,P. Kamalipour,Q. Ye,F. M. LaFerla,D. A. Nitz,T. C. Holmes,X. XuNeurobiology of Disease 162:105562 (2022).
L. de Kraker,K. Seignette,P. Thamizharasu,B. J. van den Boom,I. Ferreira Pica,I. Willuhn,C. N. Levelt,C. V. TogtCell Reports Methods 2(10):100299 (2022).
The impact of familiarity on cortical taste coding Journal ArticleS. M. Staszko,J. D. Boughter,M. L. FletcherCurrent Biology 32(22):4914-4924.e4 (2022).
K. Hirano,Y. Morishita,M. Minami,H. NomuraScientific Reports 12(1) (2022).
The representation of context in mouse hippocampus is preserved despite neural drift Journal ArticleA. T. Keinath,C. Mosser,M. P. BrandonNature Communications 13(1) (2022).
Tracking longitudinal population dynamics of single neuronal calcium signal using SCOUT Journal ArticleK. G. Johnston,S. F. Grieco,H. Zhang,S. Jin,X. Xu,Q. NieCell Reports Methods 2(5):100207 (2022).
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into a content page (e.g.
the wiki's Publications page) to render a searchable,
filterable view of every page in Category:Publication.
Renders, top to bottom:
- Header — h1 title + lead paragraph + a stat strip showing
total publication count and distinct journal count.
- Filtered publications list — an SRF
format=filtered
ask that pairs the Template:UI/publications_library/entry row partial with client-side filter controls for Publication year, Publication type, Paper type, Keyword, and Project. The filter sidebar renders next to the list and updates the visible rows live (no page reload, no Special:SearchByProperty round-trip).
Keyword (Has keyword, Text, multi-valued) and Project (Has project, Page-typed, multi-valued) are surfaced as sidebar facets via+filter=valuealongside the other tag-like facets. SRF builds the chip list from the distinct values seen across the loaded result set, so the controlling knob for facet coverage is thelimitparameter — a value outside the loaded window won't appear as a chip. Both printouts sit at the end of the printout list so existing positional args in Template:UI/publications_library/entry don't shift; the row partial currently ignores them (sidebar-only surfacing).
Why format=filtered instead of chips + Special:SearchByProperty
The earlier cut of this template surfaced facets as a chip strip
linking to Special:SearchByProperty — a deliberately
no-JavaScript choice that kept it working when SRF wasn't installed,
at the cost of bouncing the user off the page on every filter click.
With SRF available on the deployment we now target, the filtered list
gives a single-page faceted browse without that round-trip, so the
chip strip was removed to avoid duplicating the same affordance in
two UIs.
If a future deployment ships without SRF (or wants explicit no-JS
fallback), re-add the chip strip by composing
format=list + Special:SearchByProperty as
the previous version did — the
Template:UI/publications_library/facet_chip partial used by that
version stays in the repo for that reuse.
Why the filtered-list entry partial takes positional args
SRF's filtered-list view, when list view named args=yes
is set, prefixes every param name with a literal ? (see
'?' . $printrequest->getLabel() in SRF's
ListView.php). A template trying to read
sees nothing, because the param is actually
called ?title. Two ways out: use the awkward
syntax in the row template, or drop
list view named args=yes and use positional
{{{1}}}..{{{N}}}. We do the latter — SRF guarantees the
positional order matches the declared printout order (no shuffling
of filtered columns to the front), so positional is robust here.
The printout aliases (=Year, =Type,
=Paper type) are still set because SRF uses them as the
filter sidebar labels. Pretty labels for filters; positional args for
rendering.
Parameters (all optional)
heading— page heading (default: "Publications").
Empty string suppresses the <h1>.
lead— short intro paragraph below the heading
(default: "Peer-reviewed articles, preprints, and other scholarly works from the community.").
limit— how many publications to load into the
filtered list (default: 200). Set higher than the earlier format=template list because filtering happens client-side over the loaded result set: too low a limit hides matching publications from the filter UI. Set lower on very large libraries where the payload size of one page is the binding constraint.
Cross-template dependencies
- Template:UI/publications_library/entry — row partial for the
filtered list.
- Template:Category/Publication/byline — used by the row
partial to render the author byline.
- Template:UI/kpi_card — used for the stat strip.
- Semantic Result Formats with the filtered format enabled
($srfgFormatsincludesfiltered). The filtered-format JS/CSS resources must be loaded; without them the list will render but the filter sidebar will be inert.