Other Open Source Projects

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Listed below are open-source projects being tackled by other groups.

Constrained Nonnegative Matrix Factorization for microEndoscopic data

Analysis package for (1) identifying spatial footprints of all neurons and (2) denoising, demixing and deconvolving the temporal signals.

CNMF-E https://github.com/zhoupc/CNMF_E

Miniature Microscope from the Gardner Lab at Boston University

Gardner Lab Miniature Microscope


"A team of neuroscientists who want to change the way our tools are developed and shared."

Open Ephys

Miniscope Bonsai Package by Jon Newman

"Bonsai package for controlling and acquiring data from headborne miniscopes for calcium imaging"



"Open source hardware and software for behavioral neuroscience. Learn how to design and build fully functional animal behavioral setups rapidly, cheaply, and easily."


Open Behavior

"Open Behavior is dedicated to accelerating behavioral neuroscience research through the promotion of collaboration and open-source projects."

Open Behavior