Difference between revisions of "Other Open Source Projects"
(→Constrained Nonnegative Matrix Factorization for microEndoscopic data: Adding new analysis package, CaImAn) |
|||
| Line 20: | Line 20: | ||
[[CNMF-E]] | [[CNMF-E]] | ||
| − | https://github.com/zhoupc/CNMF_E | + | https://github.com/zhoupc/CNMF_E (Matlab) |
| + | |||
| + | |||
| + | CaImAn https://github.com/flatironinstitute/CaImAn (Python) | ||
== Miniature Microscope from the Gardner Lab at Boston University == | == Miniature Microscope from the Gardner Lab at Boston University == | ||
Revision as of 18:25, 21 March 2018
Listed below are open-source projects being tackled by other groups.
Contents
- 1 Miniscope Baseplate and Protective Cone for Rats by Bastijn van den Boom at NIN
- 2 Miniscope Gripper by Bastijn van den Boom at NIN
- 3 Miniscope Bonsai Package by Jon Newman
- 4 Constrained Nonnegative Matrix Factorization for microEndoscopic data
- 5 Miniature Microscope from the Gardner Lab at Boston University
- 6 Open-Ephys
- 7 OpenMaze
- 8 Open Behavior
Miniscope Baseplate and Protective Cone for Rats by Bastijn van den Boom at NIN
Description, pictures, drawings, and part files for a Miniscope baseplate and protective cone.
Miniscope Baseplate and Protective Cone for Rats
Miniscope Gripper by Bastijn van den Boom at NIN
Description, pictures, drawings, and part files for a Miniscope gripper for holding the Miniscope while baseplating.
Miniscope Bonsai Package by Jon Newman
"Bonsai package for controlling and acquiring data from headborne miniscopes for calcium imaging"
Constrained Nonnegative Matrix Factorization for microEndoscopic data
Analysis package for (1) identifying spatial footprints of all neurons and (2) denoising, demixing and deconvolving the temporal signals.
CNMF-E https://github.com/zhoupc/CNMF_E (Matlab)
CaImAn https://github.com/flatironinstitute/CaImAn (Python)
Miniature Microscope from the Gardner Lab at Boston University
Gardner Lab Miniature Microscope
Open-Ephys
"A team of neuroscientists who want to change the way our tools are developed and shared."
OpenMaze
"Open source hardware and software for behavioral neuroscience. Learn how to design and build fully functional animal behavioral setups rapidly, cheaply, and easily."
Open Behavior
"Open Behavior is dedicated to accelerating behavioral neuroscience research through the promotion of collaboration and open-source projects."
