Hi Daniel, thanks again, it seems indeed to be an issue with too little voltage being sent from the CMOS to the LED: it is still not fully clear what is going on, I tried the following:
1) use long mouser cable: measure 3.4V at sig/gnd on CMOS PCB, 2.3V on LED output CMOS, 3rd top LED on the DAQ PCB is on > cannot control LED intensity
2) short RG58 50Ohm coaxial cable 4.8V at sig/gnd on CMOS PCB, 2.6V to LED, 3rd LED is not on > cannot connect to the scope
Unfortunately, I now started to get again "msCam frame retrieve error!" with setup 1 (using 2 different DAQ boards and 2 different CMOS PCBs that previously worked), even though all three LEDs are on, and the same voltages are measured (3.4V at sig/gnd on CMOS PCB, 2.3VLED on LED output CMOS). I will try to find another USB3.0 port (so far this was the only USB3.0 port on which I got the boards to work) but if you have any other ideas what to check let me know.