Messages

1

Data Analysis / Re: reasonable value of corrCoefThreshDefault

« on: March 08, 2017, 05:33:36 AM »

Thanks, Daniel..
It is good idea to having a plot threshold vs no. of segments.

Best..

2

Data Analysis / Re: reasonable value of corrCoefThreshDefault

« on: March 07, 2017, 11:18:35 AM »

Thanks.. Daniel.
I'm always surprised at your work during using your code.
This is tremendous work.

Actually I try to analyze images using both your code and inscopix, mosaic.
Using mosaic, it sorts too many cells.
By threshold 0.9, few cells were detect, which contains possibility my image's quality is not good.
It is hard to tell. Do you have any standard or roles that should be applied?

Best .. Eunee

3

Data Analysis / reasonable value of corrCoefThreshDefault

« on: March 06, 2017, 12:48:32 PM »

Hi..
During analysis, I've got so few cells.
So I changed value of corrCoefThreshDefault from 0.9 to 0.95.
I can see this change works in my images and I can tell this results in more reasonable segmentation.

What does corrCoefThreshDefault do in the segmentation? What if I set this value higher or lower?
Is there any limitation?

I hope you understand my question well in spite of poor English.

Thanks always..

Eunee Lee