Miniscope Board

General Category => Data Analysis => Topic started by: Yujin Han on March 16, 2018, 11:59:06 AM

Title: Does the downloadable Matlab code here using CNMF-E algorithm?
Post by: Yujin Han on March 16, 2018, 11:59:06 AM

Hello,

I'm a newbie for miniscope data analysis and I'm little confused about how exactly the Matlab code downloadable here detect neuronal signals. Does this code detect signals by CNMF-E (or CNMF) algorithm? or does it use PCA/ ICA? (or anything else that I do not know)

Sorry for the basic question but I need help.

Thanks.

Title: Re: Does the downloadable Matlab code here using CNMF-E algorithm?
Post by: Honi on March 20, 2018, 04:04:56 PM

No, it does not.  The CNMF-E code is available on github.  https://github.com/flatironinstitute/CaImAn/ is the python version, and https://github.com/flatironinstitute/CaImAn-MATLAB is the matlab version, which is extended here https://github.com/zhoupc/CNMF_E.